GgaEX6012970 @ galGal4
Exon Skipping
Gene
ENSGALG00000007762 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr14:12532836-12540131:-
Coord C1 exon
chr14:12539882-12540131
Coord A exon
chr14:12539228-12539341
Coord C2 exon
chr14:12532836-12533078
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACTGCTTTTCCTTGTTGCAGTTG
3' ss Score
9.62
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
TCCCAGATGCAAACTCAAGTGCAGCAAGTGGGGATTGTACCAACGCAGGCCATGGCAACTGGACCAACAGCAGACCCGGAGAAGCGCAAACTGATCCAGCAGCAGTTGGTTTTGCTGCTTCATGCCCACAAATGTCAGAGGCGTGAGCAGGCGAACGGAGAGGTGCGAGCCTGTGCTCTGCCACACTGCCGAACCATGAAGAATGTCCTCAACCACATGACGCACTGCCAGGCTGGGAAGGCCTGTCAAG
Seq A exon
TTGCTCATTGTGCATCTTCGAGACAAATCATCTCCCACTGGAAGAATTGTACTCGGCACGACTGTCCCGTGTGCCTTCCCTTGAAAAATGCCAGTGACAAGAGAAACCAACAGC
Seq C2 exon
CCCTCTTAGGGTCTCCAGCTGGTGGAATGCAGAATTCCATTGGTTCAGTTGGAACAGGCCAGCAGAATAATCCATCGCTAAGTAATCCTAATCCGATTGACCCCAGCTCCATGCAACGAGCCTATGCTGCTCTTGGACTCCCATATGGCAACCAGCCTCAGACACAGTTGCAGCCCCAGGTACAAGGCCAACAGCCAGCACAGCCTCAGGCTCACCAGCAAATGAGGACCATTAATGCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762-'7-7,'7-5,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.231 C2=1.000
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PU(66.7=64.3)
A:
PF0213511=zf-TAZ=PD(32.1=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCAAGTGGGGATTGTAC
R:
CACCAGCTGGAGACCCTAAGA
Band lengths:
255-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]