MmuEX0012695 @ mm9
Exon Skipping
Gene
ENSMUSG00000022521 | Crebbp
Description
CREB binding protein [Source:MGI Symbol;Acc:MGI:1098280]
Coordinates
chr16:4128444-4138985:-
Coord C1 exon
chr16:4138745-4138985
Coord A exon
chr16:4137366-4137479
Coord C2 exon
chr16:4128444-4128686
Length
114 bp
Sequences
Splice sites
3' ss Seq
CGTTGTTTTTCTGGTCATAGTTG
3' ss Score
6.1
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TCCCAGTTGCAAACATCAGTGGGAATTGTACCCACACAAGCAATTGCAACAGGCCCCACAGCAGACCCTGAAAAACGCAAACTGATACAGCAGCAGCTGGTTCTACTGCTTCATGCCCACAAATGTCAGAGACGAGAGCAAGCAAATGGAGAGGTTCGAGCCTGTTCTCTCCCACACTGTCGAACCATGAAAAACGTTTTGAATCACATGACACATTGTCAGGCTGGGAAAGCCTGCCAAG
Seq A exon
TTGCCCATTGTGCATCTTCACGACAAATCATCTCTCATTGGAAGAACTGCACACGACATGACTGTCCTGTTTGCCTCCCTTTGAAAAATGCCAGTGACAAGCGAAACCAACAAA
Seq C2 exon
CCATCCTGGGATCTCCAGCTAGTGGAATTCAAAACACAATTGGTTCTGTTGGTGCAGGGCAACAGAATGCCACTTCCTTAAGTAACCCAAATCCCATAGACCCCAGTTCCATGCAGCGGGCCTATGCTGCTCTAGGACTCCCCTACATGAACCAGCCTCAGACGCAGCTGCAGCCTCAGGTTCCTGGCCAGCAACCAGCACAGCCTCCAGCCCACCAGCAGATGAGGACTCTCAATGCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022521_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.309 A=0.179 C2=1.000
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PU(66.7=66.7)
A:
PF0213511=zf-TAZ=PD(32.1=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACAGCAGACCCTGAAAAA
R:
CCCTGCACCAACAGAACCAAT
Band lengths:
246-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types