GgaEX6012970 @ galGal3
Exon Skipping
Gene
ENSGALG00000007762 | CREBBP
Description
NA
Coordinates
chr14:13235651-13242940:-
Coord C1 exon
chr14:13242697-13242940
Coord A exon
chr14:13242043-13242156
Coord C2 exon
chr14:13235651-13235893
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACTGCTTTTCCTTGTTGCAGTTG
3' ss Score
9.62
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
ATGCAAACTCAAGTGCAGCAAGTGGGGATTGTACCAACGCAGGCCATGGCAACTGGACCAACAGCAGACCCGGAGAAGCGCAAACTGATCCAGCAGCAGTTGGTTTTGCTGCTTCATGCCCACAAATGTCAGAGGCGTGAGCAGGCGAACGGAGAGGTGCGAGCCTGTGCTCTGCCACACTGCCGAACCATGAAGAATGTCCTCAACCACATGACGCACTGCCAGGCTGGGAAGGCCTGTCAAG
Seq A exon
TTGCTCATTGTGCATCTTCGAGACAAATCATCTCCCACTGGAAGAATTGTACTCGGCACGACTGTCCCGTGTGCCTTCCCTTGAAAAATGCCAGTGACAAGAGAAACCAACAGC
Seq C2 exon
CCCTCTTAGGGTCTCCAGCTGGTGGAATGCAGAATTCCATTGGTTCAGTTGGAACAGGCCAGCAGAATAATCCATCGCTAAGTAATCCTAATCCGATTGACCCCAGCTCCATGCAACGAGCCTATGCTGCTCTTGGACTCCCATATGGCAACCAGCCTCAGACACAGTTGCAGCCCCAGGTACAAGGCCAACAGCCAGCACAGCCTCAGGCTCACCAGCAAATGAGGACCATTAATGCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=0.231 C2=1.000
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PU(66.7=65.9)
A:
PF0213511=zf-TAZ=PD(32.1=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCAAGTGGGGATTGTAC
R:
CACCAGCTGGAGACCCTAAGA
Band lengths:
255-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]