RnoEX0024472 @ rn6
Exon Skipping
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11669353-11678997:+
Coord C1 exon
chr10:11669353-11669593
Coord A exon
chr10:11670856-11670969
Coord C2 exon
chr10:11678755-11678997
Length
114 bp
Sequences
Splice sites
3' ss Seq
CGTTGTTTTTCTGGTCATAGTTG
3' ss Score
6.1
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TCCCAGTTGCAAACATCAGTGGGAATTGTACCCGCACAAGGAATTGCAACCGGCCCCACAGCAGACCCTGAGAAGCGCAAACTGATACAGCAGCAGCTGGTTCTACTGCTTCATGCCCACAAATGTCAGCGACGAGAGCAAGCGAATGGAGAGGTTCGGGCCTGTTCTCTCCCACACTGTCGAACCATGAAAAATGTTTTGAATCACATGACACATTGTCAGGCTGGGAAAGCCTGCCAAG
Seq A exon
TTGCCCATTGTGCATCTTCACGACAAATCATCTCTCATTGGAAGAACTGCACACGACATGACTGTCCTGTTTGCCTCCCTTTGAAAAATGCCAGTGACAAGCGAAACCAACAAA
Seq C2 exon
CCATCCTGGGATCTCCAGCTAGTGGAATTCAAAACACAATTGGTTCTGTTGGTGCAGGGCAACAGAATGCCACTTCTTTAAGTAACCCAAATCCCATAGACCCCAGTTCCATGCAGCGGGCCTATGCTGCTCTAGGACTCCCCTACATGAACCAGCCTCAGACGCAGCTGCAGCCTCAGGTTCCTGGCCAGCAACCAGCACAACCTCCAGCCCACCAGCAGATGAGGACTCTGAATGCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=0.090 C2=1.000
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PU(66.7=66.7)
A:
PF0213511=zf-TAZ=PD(32.1=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGCAAGCGAATGGAGAG
R:
AGTCCTAGAGCAGCATAGGCC
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]