DreEX0024206 @ danRer10
Exon Skipping
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26888819-26903530:+
Coord C1 exon
chr22:26888819-26889062
Coord A exon
chr22:26897401-26897523
Coord C2 exon
chr22:26903276-26903530
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTCTTTGCAGTGG
3' ss Score
10.03
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CCCCAGCAGCAGCAGGTGTCGGTGGGCATGGTGGCGGGTCAGGGCGTATCGACGGGTCCCACGGCTGACCCGGAGAAGCGTAAACTGATCCAGCAGCAGCTGGTTCTGCTGCTTCATGCCCACAAGTGCCAGCGGCGCGAGCAGGCCAACGGAGATGTGCGAGCATGTGCTCTGCCACACTGCAGGACCATGAAGAACGTCCTCAACCACATGACGCACTGCCAGGCTGGCAAGTCCTGCCAAG
Seq A exon
TGGCTCACTGTGCTTCATCGAGGCAGATCATCTCGCACTGGAAGAACTGCACCAGACATGACTGTCCTGTCTGCCTGCCCCTGAAGAACGCCAGCGAAAACGCTAATAAACACAACCAGCAAC
Seq C2 exon
CAATGCTGAGTCCCCCAAACGCTAGTCTACAAACCCCCATTGGGTCTGTCGGCACGGGGCAGCAGACTGCGCCCGCTCTGCCCAGCTCCACACCCATCGACCCAAGCTCCATGCGGCGGGCGTATGCTGCCCTCGGCCTCCCCTACAGCAATCAGAACCCCACACAGACCCAGTCCCCCACGCAGACACAGGGCCCCGGACAGACAACGGCACAGACACCACACCAGCAGCCAATGAGATCCATCAATGCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609-'3-8,'3-7,4-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=0.357 C2=1.000
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PU(66.7=65.9)
A:
PF0213511=zf-TAZ=PD(32.1=61.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACTGCAGGACCATGAAG
R:
CTGGGTCTGTGTGGGGTTCT
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]