BtaEX6108249 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3057603-3058954:-
Coord C1 exon
chr25:3058804-3058954
Coord A exon
chr25:3058322-3058468
Coord C2 exon
chr25:3057603-3057716
Length
147 bp
Sequences
Splice sites
3' ss Seq
CAGAAGGCTCTTTGTTCCAGGTT
3' ss Score
4.89
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GACTACAGACCACACGGTTGGGAAACCACCTGGAAGACCGAGTCAACAAGTTTTTGCGGCGACAGAATCACCCTGAAGCTGGCGAGGTGTTTGTCCGTGTGGTGGCCAGCTCAGACAAGACAGTGGAGGTCAAGCCAGGGATGAAGTCACG
Seq A exon
GTTCGTGGATTCTGGGGAGATGTCGGAGTCTTTCCCATACAGAACTAAAGCACTCTTTGCCTTTGAGGAGATTGACGGGGTGGACGTGTGCTTCTTTGGGATGCACGTCCAGGAGTACGGCTCTGACTGCCCCCCGCCAAACACAAG
Seq C2 exon
GCGTGTGTACATATCTTATCTGGACAGTATTCATTTCTTCCGACCCCGATGCCTCCGAACAGCCGTTTACCATGAGATCCTTATTGGATATTTAGAGTATGTGAAGAAATTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403-'25-29,'25-28,26-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=PU(11.7=70.6)
A:
PF082146=KAT11=FE(16.0=100)
C2:
PF082146=KAT11=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACACGGTTGGGAAACC
R:
TAAGGATCTCATGGTAAACGGCTG
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]