RnoEX0024467 @ rn6
Exon Skipping
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11709265-11710609:+
Coord C1 exon
chr10:11709265-11709415
Coord A exon
chr10:11709726-11709872
Coord C2 exon
chr10:11710496-11710609
Length
147 bp
Sequences
Splice sites
3' ss Seq
TAGGCTCTGGCTTGTTTCAGGTT
3' ss Score
7.74
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGCTGCAGACCACACGGTTGGGAAACCATTTGGAAGACCGAGTGAACAAGTTTTTGCGGCGCCAGAATCACCCTGAAGCTGGGGAGGTTTTTGTCAGAGTGGTGGCCAGCTCAGACAAGACTGTGGAGGTCAAGCCAGGAATGAAGTCAAG
Seq A exon
GTTTGTGGATTCTGGAGAAATGTCTGAATCTTTCCCATATCGTACCAAAGCACTCTTCGCTTTTGAGGAGATTGATGGAGTCGATGTGTGCTTTTTTGGGATGCATGTACAAGAATATGGCTCCGATTGCCCCCCACCTAATACAAG
Seq C2 exon
GCGCGTCTATATATCTTATCTGGACAGTATTCATTTCTTCCGGCCCCGCTGTCTCCGCACCGCTGTTTACCATGAGATCCTCATTGGATATCTAGAGTATGTGAAGAAATTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330-'30-31,'30-30,31-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=PU(11.7=70.6)
A:
PF082146=KAT11=FE(15.9=100)
C2:
PF082146=KAT11=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACACGGTTGGGAAACC
R:
TCACATACTCTAGATATCCAATGAGG
Band lengths:
247-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]