DreEX0024205 @ danRer10
Exon Skipping
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26922140-26922879:+
Coord C1 exon
chr22:26922140-26922290
Coord A exon
chr22:26922533-26922679
Coord C2 exon
chr22:26922766-26922879
Length
147 bp
Sequences
Splice sites
3' ss Seq
AATCCCCTGATTTGTTTCAGGTT
3' ss Score
9.34
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGTTGCAGTCAACGAGGTTAGGCACTTACATAGAGGATCGAGTGAACAAGTACTTGAAGAGGCAGAACCATCCGGAAGCTGGAGAGGTGTTTGTACGAGTAGTAGCCAGTTCAGACAAAACGGTGGAGGTCAAACCTGGCATGAAGGCCAA
Seq A exon
GTTTGTGGACACAGGAGAGATGATGGAGGCCTTCCCCTACAGAACCAAAGCACTTTTCGCCTTTGAGGAAATTGATGGAGTGGATGTGTGTTTTTTTGGCATGCACGTGCAAGAATACGGCTCTGATTGCCCTTTCCCTAACACCAG
Seq C2 exon
ACGGGTATACATATCATACCTCGATAGTATTCACTTCTTCAAACCTCGCATGCTGAGAACAGCTGTCTATCACGAAATCCTCATTGGCTATTTAGAATACGTCAAGAAGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609-'27-32,'27-31,28-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=PU(11.8=70.6)
A:
PF082146=KAT11=FE(16.1=100)
C2:
PF082146=KAT11=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGTCAACGAGGTTAGGC
R:
AAATAGCCAATGAGGATTTCGTGA
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]