MmuEX1007506 @ mm10
Exon Skipping
Gene
ENSMUSG00000022521 | Crebbp
Description
CREB binding protein [Source:MGI Symbol;Acc:MGI:1098280]
Coordinates
chr16:4093472-4094786:-
Coord C1 exon
chr16:4094636-4094786
Coord A exon
chr16:4094174-4094320
Coord C2 exon
chr16:4093472-4093585
Length
147 bp
Sequences
Splice sites
3' ss Seq
CAGGTTTTGGCTTGTTTCAGGTT
3' ss Score
8.18
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
Exon sequences
Seq C1 exon
GGCTGCAGACCACACGATTGGGAAACCACTTAGAAGACAGAGTGAATAAGTTTTTGCGGCGCCAGAATCACCCTGAAGCTGGGGAGGTTTTTGTCAGAGTGGTGGCCAGCTCAGACAAGACTGTGGAGGTCAAGCCGGGAATGAAGTCAAG
Seq A exon
GTTTGTGGATTCTGGAGAGATGTCGGAATCTTTCCCATATCGTACCAAAGCACTCTTTGCTTTTGAGGAGATCGATGGAGTCGATGTGTGCTTTTTTGGGATGCATGTGCAAGAATACGGCTCTGATTGCCCCCCACCAAATACAAG
Seq C2 exon
GCGTGTATACATATCTTATCTGGACAGTATTCATTTCTTCCGGCCCCGCTGCCTCCGGACAGCTGTTTACCATGAGATCCTCATCGGATATCTCGAGTATGTGAAGAAATTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022521-'43-47,'43-46,44-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=PU(11.7=70.6)
A:
PF082146=KAT11=FE(85.7=100),PF082146=KAT11=PU(1.7=4.1)
C2:
PF082146=KAT11=FE(12.3=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACCACACGATTGGGAAA
R:
CACATACTCGAGATATCCGATGAGG
Band lengths:
250-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types