GgaEX6012982 @ galGal4
Exon Skipping
Gene
ENSGALG00000007762 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr14:12504375-12506115:-
Coord C1 exon
chr14:12505965-12506115
Coord A exon
chr14:12505015-12505161
Coord C2 exon
chr14:12504375-12504488
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCTGTCACCCTTTTCTTCAGATT
3' ss Score
9.45
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGCTGCAGACCACCCGCTTGGGAAACCATTTGGAGGACAGAGTGAACAAGTTTCTGAGGAGACAGAATCATCCCGAGGCCGGAGAGGTCTTTGTCAGAGTGGTAGCAAGTTCAGATAAGACAGTAGAAGTTAAACCAGGGATGAAATCCAG
Seq A exon
ATTTGTGGATTCTGGGGAGATGTCAGAATCCTTCCCTTACCGTACCAAAGCTCTGTTTGCTTTTGAGGAGATAGATGGAGTAGATGTCTGCTTCTTTGGCATGCATGTGCAGGAGTATGGCTCGGACTGCCCCCCTCCAAACACAAG
Seq C2 exon
ACGTGTGTACATATCGTATCTAGATAGTATTCATTTCTTCCGCCCCCGTTGTCTCCGAACTGCAGTTTATCATGAAATCCTCATTGGATATTTGGAGTACGTGAAGAAACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762-'32-36,'32-35,33-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=PU(11.7=70.6)
A:
PF082146=KAT11=FE(16.0=100)
C2:
PF082146=KAT11=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACCATTTGGAGGACAGAGT
R:
CCAAGTTTCTTCACGTACTCCA
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]