HsaEX0017201 @ hg38
Exon Skipping
Gene
ENSG00000005339 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr16:3736650-3740549:-
Coord C1 exon
chr16:3740399-3740549
Coord A exon
chr16:3739578-3739724
Coord C2 exon
chr16:3736650-3736815
Length
147 bp
Sequences
Splice sites
3' ss Seq
GGCTCTGGCTTTTGTTTCAGGTT
3' ss Score
10.43
5' ss Seq
GAGGTAGTT
5' ss Score
5.77
Exon sequences
Seq C1 exon
GGCTGCAGACCACAAGACTGGGAAACCACTTGGAAGACCGAGTGAACAAATTTTTGCGGCGCCAGAATCACCCTGAAGCCGGGGAGGTTTTTGTCCGAGTGGTGGCCAGCTCAGACAAGACGGTGGAGGTCAAGCCCGGGATGAAGTCACG
Seq A exon
GTTTGTGGATTCTGGGGAAATGTCTGAATCTTTCCCATATCGAACCAAAGCTCTGTTTGCTTTTGAGGAAATTGACGGCGTGGATGTCTGCTTTTTTGGAATGCACGTCCAAGAATACGGCTCTGATTGCCCCCCTCCAAACACGAG
Seq C2 exon
GTATGTGACAGGGCACATCTGGGCCTGTCCTCCAAGTGAAGGAGATGATTACATCTTCCATTGCCACCCACCTGATCAAAAAATACCCAAGCCAAAACGACTGCAGGAGTGGTACAAAAAGATGCTGGACAAGGCGTTTGCAGAGCGGATCATCCATGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005339_MULTIEX1-7/9=6-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=PU(11.7=70.6)
A:
PF082146=KAT11=FE(16.0=100)
C2:
PF082146=KAT11=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTTTGCGGCGCCAGAATC
R:
AAACGCCTTGTCCAGCATCTT
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development