HsaEX0017202 @ hg38
Exon Skipping
Gene
ENSG00000005339 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr16:3736650-3739724:-
Coord C1 exon
chr16:3739578-3739724
Coord A exon
chr16:3738559-3738672
Coord C2 exon
chr16:3736650-3736815
Length
114 bp
Sequences
Splice sites
3' ss Seq
CATGTGCCTCCTTCCCACAGGCG
3' ss Score
12.75
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTTTGTGGATTCTGGGGAAATGTCTGAATCTTTCCCATATCGAACCAAAGCTCTGTTTGCTTTTGAGGAAATTGACGGCGTGGATGTCTGCTTTTTTGGAATGCACGTCCAAGAATACGGCTCTGATTGCCCCCCTCCAAACACGAG
Seq A exon
GCGTGTGTACATTTCTTATCTGGATAGTATTCATTTCTTCCGGCCACGTTGCCTCCGCACAGCCGTTTACCATGAGATCCTTATTGGATATTTAGAGTATGTGAAGAAATTAGG
Seq C2 exon
GTATGTGACAGGGCACATCTGGGCCTGTCCTCCAAGTGAAGGAGATGATTACATCTTCCATTGCCACCCACCTGATCAAAAAATACCCAAGCCAAAACGACTGCAGGAGTGGTACAAAAAGATGCTGGACAAGGCGTTTGCAGAGCGGATCATCCATGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005339_MULTIEX1-8/9=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(16.0=100)
A:
PF082146=KAT11=FE(12.4=100)
C2:
PF082146=KAT11=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAATTGACGGCGTGGAT
R:
GTCATGGATGATCCGCTCTGC
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development