DreEX6099431 @ danRer10
Exon Skipping
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26922533-26923135:+
Coord C1 exon
chr22:26922533-26922679
Coord A exon
chr22:26922766-26922879
Coord C2 exon
chr22:26922970-26923135
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCTGTCCTATCTAGACG
3' ss Score
9.58
5' ss Seq
TGGGTACGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GTTTGTGGACACAGGAGAGATGATGGAGGCCTTCCCCTACAGAACCAAAGCACTTTTCGCCTTTGAGGAAATTGATGGAGTGGATGTGTGTTTTTTTGGCATGCACGTGCAAGAATACGGCTCTGATTGCCCTTTCCCTAACACCAG
Seq A exon
ACGGGTATACATATCATACCTCGATAGTATTCACTTCTTCAAACCTCGCATGCTGAGAACAGCTGTCTATCACGAAATCCTCATTGGCTATTTAGAATACGTCAAGAAGCTTGG
Seq C2 exon
ATATGTTACGGCACACATCTGGGCATGTCCGCCTAGTGAGGGTGATGACTATATCTTCCATTGTCACCCTGCCGACCAGAAAATCCCAAAACCTAAGCGCCTGCAGGAGTGGTACCGCAAAATGTTGGACAAAGCCTTTGCTGAGCGGATTCTGCATGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609-'28-33,'28-32,29-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(16.1=100)
A:
PF082146=KAT11=FE(12.5=100)
C2:
PF082146=KAT11=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATGATGGAGGCCTTCCC
R:
ATTTTGCGGTACCACTCCTGC
Band lengths:
255-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]