MmuEX6060590 @ mm9
Exon Skipping
Gene
ENSMUSG00000022521 | Crebbp
Description
CREB binding protein [Source:MGI Symbol;Acc:MGI:1098280]
Coordinates
chr16:4092190-4094207:-
Coord C1 exon
chr16:4094173-4094207
Coord A exon
chr16:4093472-4093585
Coord C2 exon
chr16:4092190-4092355
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCGCTTTCTATCCTCCACAGGCG
3' ss Score
10.57
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
AATACGGCTCTGATTGCCCCCCACCAAATACAAGG
Seq A exon
GCGTGTATACATATCTTATCTGGACAGTATTCATTTCTTCCGGCCCCGCTGCCTCCGGACAGCTGTTTACCATGAGATCCTCATCGGATATCTCGAGTATGTGAAGAAATTGGG
Seq C2 exon
GTATGTGACAGGACATATTTGGGCCTGTCCCCCAAGTGAAGGAGATGACTATATCTTTCATTGCCACCCCCCTGACCAGAAAATCCCCAAACCAAAACGACTACAGGAGTGGTACAAGAAGATGCTGGACAAGGCGTTTGCAGAGAGGATCATTAACGACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022521-'30-29,'30-28,32-29=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(3.6=100)
A:
PF082146=KAT11=FE(12.3=100)
C2:
PF082146=KAT11=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: