GgaEX1017560 @ galGal4
Exon Skipping
Gene
ENSGALG00000007762 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr14:12503024-12505161:-
Coord C1 exon
chr14:12505015-12505161
Coord A exon
chr14:12504375-12504488
Coord C2 exon
chr14:12503024-12503191
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTCACTGTTGTAGACG
3' ss Score
9.69
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATTTGTGGATTCTGGGGAGATGTCAGAATCCTTCCCTTACCGTACCAAAGCTCTGTTTGCTTTTGAGGAGATAGATGGAGTAGATGTCTGCTTCTTTGGCATGCATGTGCAGGAGTATGGCTCGGACTGCCCCCCTCCAAACACAAG
Seq A exon
ACGTGTGTACATATCGTATCTAGATAGTATTCATTTCTTCCGCCCCCGTTGTCTCCGAACTGCAGTTTATCATGAAATCCTCATTGGATATTTGGAGTACGTGAAGAAACTTGG
Seq C2 exon
GACATCTTCAAACAAGCAACTGAAGACAGGCTGACGAGTGCCAAGGAGCTGCCTTACTTTGAAGGTGATTTCTGGCCCAACGTGCTGGAAGAAAGCATTAAAGAGCTGGAGCAGGAGGAGGAGGAAAGGAAGAAGGAAGAAAGCACTGCAGCCAGTGAAACAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762_MULTIEX1-1/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.393
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(16.0=100)
A:
PF082146=KAT11=FE(12.4=100)
C2:
PF082146=KAT11=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCTTACCGTACCAAAGC
R:
TTCCTTTCCTCCTCCTCCTGC
Band lengths:
249-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]