RnoEX0024468 @ rn6
Exon Skipping
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11709726-11711763:+
Coord C1 exon
chr10:11709726-11709872
Coord A exon
chr10:11710496-11710609
Coord C2 exon
chr10:11711598-11711763
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCCCCCACCCCACCCCACAGGCG
3' ss Score
7.73
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTTTGTGGATTCTGGAGAAATGTCTGAATCTTTCCCATATCGTACCAAAGCACTCTTCGCTTTTGAGGAGATTGATGGAGTCGATGTGTGCTTTTTTGGGATGCATGTACAAGAATATGGCTCCGATTGCCCCCCACCTAATACAAG
Seq A exon
GCGCGTCTATATATCTTATCTGGACAGTATTCATTTCTTCCGGCCCCGCTGTCTCCGCACCGCTGTTTACCATGAGATCCTCATTGGATATCTAGAGTATGTGAAGAAATTGGG
Seq C2 exon
GTATGTGACAGGACACATTTGGGCCTGTCCCCCAAGTGAAGGAGATGACTACATCTTTCATTGCCACCCCCCTGACCAGAAAATCCCCAAACCAAAACGACTACAGGAGTGGTACAAGAAGATGCTGGACAAGGCATTCGCAGAGAGGATCATTAACGACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330-'31-33,'31-31,33-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(15.9=100)
A:
PF082146=KAT11=FE(12.3=100)
C2:
PF082146=KAT11=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACCAAAGCACTCTTCGCT
R:
CGAATGCCTTGTCCAGCATCT
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]