MmuEX6060590 @ mm10
Exon Skipping
Gene
ENSMUSG00000022521 | Crebbp
Description
CREB binding protein [Source:MGI Symbol;Acc:MGI:1098280]
Coordinates
chr16:4092190-4094320:-
Coord C1 exon
chr16:4094174-4094320
Coord A exon
chr16:4093472-4093585
Coord C2 exon
chr16:4092190-4092355
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCGCTTTCTATCCTCCACAGGCG
3' ss Score
10.57
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTTTGTGGATTCTGGAGAGATGTCGGAATCTTTCCCATATCGTACCAAAGCACTCTTTGCTTTTGAGGAGATCGATGGAGTCGATGTGTGCTTTTTTGGGATGCATGTGCAAGAATACGGCTCTGATTGCCCCCCACCAAATACAAG
Seq A exon
GCGTGTATACATATCTTATCTGGACAGTATTCATTTCTTCCGGCCCCGCTGCCTCCGGACAGCTGTTTACCATGAGATCCTCATCGGATATCTCGAGTATGTGAAGAAATTGGG
Seq C2 exon
GTATGTGACAGGACATATTTGGGCCTGTCCCCCAAGTGAAGGAGATGACTATATCTTTCATTGCCACCCCCCTGACCAGAAAATCCCCAAACCAAAACGACTACAGGAGTGGTACAAGAAGATGCTGGACAAGGCGTTTGCAGAGAGGATCATTAACGACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022521_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(85.7=100),PF082146=KAT11=PU(1.7=4.1)
A:
PF082146=KAT11=FE(12.3=100)
C2:
PF082146=KAT11=PD(5.4=5.4),PF082146=KAT11=FE(47.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTTGAGGAGATCGATGGA
R:
ATGATCCTCTCTGCAAACGCC
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types