BtaEX6108250 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3056889-3058468:-
Coord C1 exon
chr25:3058322-3058468
Coord A exon
chr25:3057603-3057716
Coord C2 exon
chr25:3056889-3057054
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTGCCCACCCCCCAGGCG
3' ss Score
8.97
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTTCGTGGATTCTGGGGAGATGTCGGAGTCTTTCCCATACAGAACTAAAGCACTCTTTGCCTTTGAGGAGATTGACGGGGTGGACGTGTGCTTCTTTGGGATGCACGTCCAGGAGTACGGCTCTGACTGCCCCCCGCCAAACACAAG
Seq A exon
GCGTGTGTACATATCTTATCTGGACAGTATTCATTTCTTCCGACCCCGATGCCTCCGAACAGCCGTTTACCATGAGATCCTTATTGGATATTTAGAGTATGTGAAGAAATTGGG
Seq C2 exon
GTATGTGACAGGGCACATCTGGGCCTGTCCCCCGAGTGAAGGAGATGACTACATCTTCCACTGCCACCCCCCTGATCAAAAAATCCCCAAGCCGAAGCGCCTGCAAGAGTGGTATAAGAAGATGCTGGACAAGGCCTTCGCCGAGCGCATCATCCATGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403-'26-31,'26-29,27-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(16.0=100)
A:
PF082146=KAT11=FE(12.4=100)
C2:
PF082146=KAT11=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCTGGGGAGATGTCGGA
R:
TTATACCACTCTTGCAGGCGC
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]