BtaEX6108378 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002178 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr25:3980235-3982290:-
Coord C1 exon
chr25:3982129-3982290
Coord A exon
chr25:3981924-3982031
Coord C2 exon
chr25:3980235-3980330
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTCCACTGCCCTCGCTGCAGAAT
3' ss Score
7.06
5' ss Seq
GAAGTGCGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
GCGGCGTCACAGGCGCGGCAGCAGCACCTGAGCTCACTGCAGGACTACATGCAGCGGTGCACGAACGAGCTGTACTGGCTGGACCAGCAGGCCCAGGGCCGCATACAGTATGACTGGAGTGACCGCAACCTCAACTACCCCAGCCGCCGGCGCCAGTACGAG
Seq A exon
AATTTCATCCACCGGAACCTGGAGGCCAAAGAGGAGAGAATTAACAAGCTGCACAGCGAGGGTGACCAGCTGCTCGCCGCCGAGCACCCCGGGAGGAACTCCATTGAA
Seq C2 exon
GCTCACATGGAGGCTGTCCACGCAGATTGGAAGGAATACCTGAACCTGCTCATCTGCGAGGAGAGCCACCTGAAGTACATGGAAGACTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002178-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.031
Domain overlap (PFAM):
C1:
PF084565=Vmethyltransf_C=FE(33.1=100),PF0043516=Spectrin=PU(41.3=79.6)
A:
PF084565=Vmethyltransf_C=FE(21.9=100),PF0043516=Spectrin=FE(33.7=100),PF123293=TMF_DNA_bd=PU(91.7=91.7)
C2:
PF084565=Vmethyltransf_C=PD(8.1=40.6),PF0043516=Spectrin=PD(22.1=71.9),PF123293=TMF_DNA_bd=PD(2.8=3.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGAGCTCACTGCAGGA
R:
CTGGTGGTAGTCTTCCATGTACT
Band lengths:
234-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]