MmuEX6060697 @ mm10
Exon Skipping
Gene
ENSMUSG00000039457 | Ppl
Description
periplakin [Source:MGI Symbol;Acc:MGI:1194898]
Coordinates
chr16:5104451-5105025:-
Coord C1 exon
chr16:5104864-5105025
Coord A exon
chr16:5104674-5104781
Coord C2 exon
chr16:5104451-5104546
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCCCATCTGCTTCCTGACAGAAT
3' ss Score
8.79
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
ACAGCATCACAGGCACGGCAGCAGCACCTGAGCTCGCTGCAGGATTACATGCAGCGCTGCACCAATGAGCTGTACTGGCTGGACCAGCAAGCCAAGGGCCGCATGCAGTATGACTGGAGCGACCGCAACCTCGACTACCCCAGCCGCCGCCGCCAGTACGAG
Seq A exon
AATTTCATCAACCGGAACCTGGAGGCCAAAGAAGAAAGAATCAACAAACTGCACACTGAAGGTGACCAACTGCTGACAGCTGAGCACCCAGGGAGGAACTCCATTGAG
Seq C2 exon
GCACACATGGAGGCTGTGCATGCTGAGTGGAAGGAGTACCTGAACCTGCTCATCTGTGAGGAGAGCCATCTGAAATACATGGAAGACTACCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039457-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.611 C2=0.031
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(41.3=79.6)
A:
PF0043516=Spectrin=FE(33.7=100)
C2:
PF0043516=Spectrin=PD(22.1=71.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCATCACAGGCACGG
R:
CCATGTATTTCAGATGGCTCTCCT
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types