DreEX0057485 @ danRer10
Exon Skipping
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36330595-36331419:-
Coord C1 exon
chr3:36331258-36331419
Coord A exon
chr3:36330983-36331090
Coord C2 exon
chr3:36330595-36330690
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTAAATGTGTACTTCATCAGAAC
3' ss Score
4.75
5' ss Seq
GCGGTAACA
5' ss Score
5.38
Exon sequences
Seq C1 exon
GCAACCTCCACGGCACGGCAGAAGAACCTGCTCAGTATGAGGGACTACATGCAGCGCTGCACCAACGAGCTCTACTGGATGGACCAGCAAGCCGAAGAGCGAATCGCATATGACTGGAGCGACAACAACCTGGATTACCCAGCCCGAAAGAGGCAGTACGAG
Seq A exon
AACTTCATCAGCAAGTGTCTGGAGTCTAAGGAGAAAACTGTCACCCAGCTGAATGAAGATGGAGAGGAACTTATTGAGCAAAACCATCCGGGAAAAAACGTCATTGCG
Seq C2 exon
GCACACATGGATGCCGTTCATTCAGACTGGAAGGAATACCTCAACCTGCTTATCTGTGAAGAAAACCACCTCAAGAACATGGATGACTATCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043-'12-12,'12-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.094
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(40.6=79.6)
A:
PF0043516=Spectrin=FE(33.0=100)
C2:
PF0043516=Spectrin=PD(23.6=78.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGGCAGAAGAACCTG
R:
GATAGTCATCCATGTTCTTGAGGTGG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]