GgaEX7008891 @ galGal4
Exon Skipping
Gene
ENSGALG00000002201 | PPL
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV96]
Coordinates
chr14:13266241-13267430:-
Coord C1 exon
chr14:13267269-13267430
Coord A exon
chr14:13266557-13266664
Coord C2 exon
chr14:13266241-13266336
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCTTGCTTCTCTCCATCTAGAAC
3' ss Score
9
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCCAGCTCTCAGCAGCGGCAGCAGGACCTGAACTCGCTGCAGGACTACATGCAGCGCTGCACCAACAAGCTCTACTGGCTGGATCAGCAGGCAAAGGACCGCACGCACTACGACTGGAGCGACCACAACCTGGACTACCCCAGCCGGCGCCGCCAGTACGAG
Seq A exon
AACTTCATCCACCGGAAGCTGGAGGAGAAGGAGGAGGCCATCAACAAGCTGCACGCAGATGGAGACCAGCTGCTGGCCCAGAACCATCCTGGGAAGAATGCCATTGAG
Seq C2 exon
GCACACATCGAGGCGGTCCACGCCGACTGGAAGGAGTACCTCAACTTCCTGATCTGCGAGGAGAGCCACCTCAAGTTCATGGAGGACTTCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGACCTGAACTCGCT
R:
GGAAGTCCTCCATGAACTTGAGG
Band lengths:
234-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]