RnoEX6046169 @ rn6
Exon Skipping
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10672296-10672866:+
Coord C1 exon
chr10:10672296-10672457
Coord A exon
chr10:10672538-10672645
Coord C2 exon
chr10:10672771-10672866
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCCCATCTGCTTCCTGACAGAAT
3' ss Score
8.79
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GCAGCATCACAGGCTCGGCAGCAGCACCTGAGCTCGCTGCAGGATTACATGCAGCGCTGCACCAATGAGCTGTACTGGCTGGACCAGCAAGCCAAGGGCCGCATACAGTATGACTGGAGTGACCGCAACCTCGACTACCCCAGCCGCCGGCGCCAGTACGAG
Seq A exon
AATTTCATCAACCGGAACCTGGAGGCCAAAGAAGAGAGAATCAACAAACTGCACACTGAAGGCGACCAGCTGCTGACAGCCGAGCACCCGGGGAGGAACTCCATTGAG
Seq C2 exon
GCACACATGGAGGCGGTGCACGCGGAGTGGAAGGAGTACCTGAACCTGCTCATCTGTGAGGAGAGCCACCTGAAATACATGGAAGACTATCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.556 C2=0.031
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(41.3=79.6)
A:
PF0043516=Spectrin=FE(33.7=100)
C2:
PF0043516=Spectrin=PD(22.1=71.9),PF0043516=Spectrin=PU(5.1=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCACAGGCTCGGC
R:
CCATGTATTTCAGGTGGCTCTCC
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]