BtaEX6108380 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002178 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr25:3978609-3980330:-
Coord C1 exon
chr25:3980235-3980330
Coord A exon
chr25:3978853-3978975
Coord C2 exon
chr25:3978609-3978755
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGCCCTCTGGTCTCCCCTAGTTC
3' ss Score
8.19
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCTCACATGGAGGCTGTCCACGCAGATTGGAAGGAATACCTGAACCTGCTCATCTGCGAGGAGAGCCACCTGAAGTACATGGAAGACTACCACCAG
Seq A exon
TTCCACAAAGACATGAAGGATGCCCAGGAGCTGCTTCGCAAGGTGGACTCAGACCTGAACCAGAAATACAGCCCTGACTTCAAGGACCGATACCAGATTGAGCTGCTGCTGCGGGAGCTGGAT
Seq C2 exon
GACCAGGAGAAGGCTCTGGACAAGTACCAGCATGTGGTGCGGGGGCTGCAGAAGCGAGGGCAGCAGGTGGTGCCCCTCAAGTACCGCCGGGAGACGCCCCTCAAGCCCATCCCCGTGGAGGCGCTCTGTGACTTCGAGGGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002178-'13-12,'13-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.049 C2=0.020
Domain overlap (PFAM):
C1:
PF084565=Vmethyltransf_C=PD(8.1=40.6),PF0043516=Spectrin=PD(22.1=71.9),PF123293=TMF_DNA_bd=PD(2.8=3.1)
A:
PF0043516=Spectrin=FE(50.6=100)
C2:
PF0043516=Spectrin=PD(40.5=65.3)
Main Skipping Isoform:
ENSBTAT00000002822fB5427
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACATGGAGGCTGTC
R:
TGGTCACCCTCGAAGTCACAG
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]