GgaEX6013097 @ galGal3
Exon Skipping
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14030663-14032967:-
Coord C1 exon
chr14:14032872-14032967
Coord A exon
chr14:14031514-14031636
Coord C2 exon
chr14:14030663-14030809
Length
123 bp
Sequences
Splice sites
3' ss Seq
GAGATTCTGCCTTTCTGCAGTTT
3' ss Score
7.13
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCACACATCGAGGCGGTCCACGCCGACTGGAAGGAGTACCTCAACTTCCTGATCTGCGAGGAGAGCCACCTCAAGTTCATGGAGGACTTCCACAAG
Seq A exon
TTTCAGAAAGACGCAAAGGACGCCCAGCAGCTCTTGAAGAAAGTCGATACGGACCTGGACCAAAAATACAGCCCAGAGTTCAAGGACAGATACCAGCTGGAGTCGCTCCTCAGGGAGCTGGAT
Seq C2 exon
GACCAAGAGAAGGCCCTGGAGAAGTACGATGCCGTGGTGCAGTCGCTGCAGGAGCGCAGCCAGCACATCCTGCCCCTGCGGTACCGCCGGCTGCCACCACCACAGCCCATCCCTGTGGAGGCTCTGTGCGAGTATGAGGGCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACATCGAGGCGGTC
R:
CTGCTCGCCCTCATACTCG
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]