DreEX6017809 @ danRer10
Exon Skipping
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36328215-36330690:-
Coord C1 exon
chr3:36330595-36330690
Coord A exon
chr3:36330382-36330504
Coord C2 exon
chr3:36328215-36328361
Length
123 bp
Sequences
Splice sites
3' ss Seq
CACTATTTTTATTTGTCCAGTTC
3' ss Score
5.7
5' ss Seq
GATGTAAAT
5' ss Score
2.29
Exon sequences
Seq C1 exon
GCACACATGGATGCCGTTCATTCAGACTGGAAGGAATACCTCAACCTGCTTATCTGTGAAGAAAACCACCTCAAGAACATGGATGACTATCACAAA
Seq A exon
TTCCAAAAGGAGGCAAGAGACACCAGTGACTTGATGAAGCGCCTGGAAACAGAGATCAACCAGAAGTATAATCCTGAGTTCAAAGACATGTATCAGATGGAGGGTCTGATTGCTGACCTAGAT
Seq C2 exon
GATCAGGCAAAGGCCATGGACCACTTCGACGAGCGTCTGAAAAACCTCCAGAAACGCAGCTTGCAGGTTCTCCCTCTGAAGTACCGCAGGGAGACTCCTCAAAAACTGCTCCCTATCGAGGCTCTGTGTGAATACGATGCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.098 C2=0.041
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(23.6=78.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACATGGATGCCGTTCAT
R:
TCTTCTGCATCGTATTCACACAGA
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]