GgaEX6013097 @ galGal4
Exon Skipping
Gene
ENSGALG00000002201 | PPL
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV96]
Coordinates
chr14:13264032-13266336:-
Coord C1 exon
chr14:13266241-13266336
Coord A exon
chr14:13264883-13265005
Coord C2 exon
chr14:13264032-13264178
Length
123 bp
Sequences
Splice sites
3' ss Seq
GAGATTCTGCCTTTCTGCAGTTT
3' ss Score
7.13
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCACACATCGAGGCGGTCCACGCCGACTGGAAGGAGTACCTCAACTTCCTGATCTGCGAGGAGAGCCACCTCAAGTTCATGGAGGACTTCCACAAG
Seq A exon
TTTCAGAAAGACGCAAAGGACGCCCAGCAGCTCTTGAAGAAAGTCGATACGGACCTGGACCAAAAATACAGCCCAGAGTTCAAGGACAGATACCAGCTGGAGTCGCTCCTCAGGGAGCTGGAT
Seq C2 exon
GACCAAGAGAAGGCCCTGGAGAAGTACGATGCCGTGGTGCAGTCGCTGCAGGAGCGCAGCCAGCACATCCTGCCCCTGCGGTACCGCCGGCTGCCACCACCACAGCCCATCCCTGTGGAGGCTCTGTGCGAGTATGAGGGCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'11-14,'11-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACATCGAGGCGGTC
R:
CTGCTCGCCCTCATACTCG
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]