RnoEX0068680 @ rn6
Exon Skipping
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10672771-10675075:+
Coord C1 exon
chr10:10672771-10672866
Coord A exon
chr10:10674650-10674772
Coord C2 exon
chr10:10674929-10675075
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCTGGTCTCCCTCAGTTT
3' ss Score
9.41
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCACACATGGAGGCGGTGCACGCGGAGTGGAAGGAGTACCTGAACCTGCTCATCTGTGAGGAGAGCCACCTGAAATACATGGAAGACTATCACCAA
Seq A exon
TTTCACAAAGATATGAAGGATGCTCAGGAACTGCTGCGCAAGGTGGACTCAGACTTGAACCAGAAATACAGCCCTGACTTCAAAGACCGATATCAGATAGAGCTGTTGCTTCGGGAGCTGGAT
Seq C2 exon
GACCAGGAGAAGGCTCTGGACAAGTATGAGGATGTGGTGCGGGGGCTGCAGAAGCGAGGGCAGCAAGTGCTGCCACTCAAGTACCGGCGTGAGACGCCACTCAAGCCCATCCCTGTGGAGGCCCTCTGTGACTTTGAGGGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(22.1=71.9),PF0043516=Spectrin=PU(5.1=12.5)
A:
PF0043516=Spectrin=FE(50.6=100)
C2:
PF0043516=Spectrin=PD(40.5=65.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACATGGAGGCGGTGC
R:
CTGGTCACCCTCAAAGTCACA
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]