MmuEX0036618 @ mm9
Exon Skipping
Gene
ENSMUSG00000039457 | Ppl
Description
periplakin [Source:MGI Symbol;Acc:MGI:1194898]
Coordinates
chr16:5102387-5104639:-
Coord C1 exon
chr16:5104544-5104639
Coord A exon
chr16:5102649-5102771
Coord C2 exon
chr16:5102387-5102533
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCTGATCTCCCTCAGTTT
3' ss Score
9.16
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCACACATGGAGGCTGTGCATGCTGAGTGGAAGGAGTACCTGAACCTGCTCATCTGTGAGGAGAGCCATCTGAAATACATGGAAGACTACCACCAA
Seq A exon
TTTCACAAAGACATGAAGGATGCTCAGGAGCTGCTACGCAAGGTGGACTCAGACTTGAACCAGAAATATAGCCCTGACTTCAAAGACCGGTATCAGATAGAGCTGTTGCTTCGGGAACTGGAT
Seq C2 exon
GACCAGGAGAAGGCTCTGGACAAGTATGAGGATGTGGTGCGAGGGCTGCAGAGGCGAGGGCAGCAAGTGGTGCCACTCAAGTACCGCCGCGAGACGCCGCTCAAGCCCATCCCTGTGGAGGCTCTCTGTGACTTTGAGAGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039457-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(22.1=71.9),PF123293=TMF_DNA_bd=PD(2.8=3.1),PF0043516=Spectrin=PU(5.1=12.5)
A:
PF0043516=Spectrin=FE(50.6=100)
C2:
PF0043516=Spectrin=PD(40.5=65.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACATGGAGGCTGTGCAT
R:
CTGGTCACTCTCAAAGTCACAGA
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: