BtaEX6109011 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19156203-19164853:-
Coord C1 exon
chr25:19164658-19164853
Coord A exon
chr25:19157772-19157897
Coord C2 exon
chr25:19156203-19156398
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTCTCTTTTGGCAGATT
3' ss Score
11.66
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
TTGATTACATCCTCATGGACCCCATGGAGAGGAAAAGACTCTTCATTCAGAGCACCCCCCGAGCGTTTCCTCAGAGAGTGATCCGGGCCCCTGTGCCCTGGCATAGTGTCTACAGGAATGCCAAGAAGTGGAATGAGGAGCACCTGCACACAGTGAACCCCATGATGCTCAGCCTGAAGCAGCTGTGGTTTTCGGA
Seq A exon
ATTTAGAGACCTCAGGTTTGTTCGAACAGCAGAATTACTGGCGGGAAAATTACCTCTGCAGCCTCATGAATATCAGGATGTCATTCAGAAACACTGCATGGAAGCACGCCAAATTCTTCTCAACAA
Seq C2 exon
ATGGATCCCCACCTGTGCCCAGCTATTTGTCTCCCGGAAGGAGCAGTGGATCCATTTTGCTCCCAAGAGTGACTATGACTCCTCTCGTAACATTGAAGAATATTTTGCTTCCGTTGCATCTTTCATGTCCCTCCAGCTCAGGGAGTTGGTCATTAACTCTCTTAAGGACCTCGTTTCCTTCTTCATGATACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGCATAGTGTCTACAG
R:
CCTGAGCTGGAGGGACATGAA
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]