HsaEX6042641 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21136496-21145775:-
Coord C1 exon
chr16:21145580-21145775
Coord A exon
chr16:21139008-21139133
Coord C2 exon
chr16:21136496-21136691
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTCTCTTTTGGCAGATT
3' ss Score
10.95
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
TTGATTACATCCTCATGGACCCAATGGAGAGAAAACGGCTCTTTATTGAGAGCATCCCCCGCTTGTTTCCTCAAAGAGTGATCCGGGCCCCTGTGCCCTGGCACAGTGTCTACAGGAGCGCCAAGAAGTGGAACGAGGAGCATCTGCACACGGTGAACCCCATGATGCTCAGGCTGAAAGAACTGTGGTTTGCAGA
Seq A exon
ATTCAGAGACCTCAGGTTTGTTCGAACAGCAGAAATACTAGCGGGAAAATTGCCTCTGCAGCCTCAGGAATTTTGGGATGTGATCCAGAAACACTGCCTGGAGGCACACCAGACTCTTCTCAACAA
Seq C2 exon
GTGGATCCCCACCTGCGCCCAGCTTTTTACCTCACGGAAGGAGCACTGGATTCATTTTGCTCCCAAGAGCAACTATGACTCAAGTCGAAACATTGAGGAATATTTTGCTTCTGTGGCATCATTCATGTCGCTGCAGCTTAGGGAGCTGGTCATTAAGTCACTTGAGGACCTCGTTTCCCTTTTCATGATACACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGAGGAGCATCTGCACAC
R:
AGGGAAACGAGGTCCTCAAGT
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)