HsaEX6042641 @ hg38
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:21125175-21134454:-
Coord C1 exon
chr16:21134259-21134454
Coord A exon
chr16:21127687-21127812
Coord C2 exon
chr16:21125175-21125370
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTCTCTTTTGGCAGATT
3' ss Score
10.95
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
TTGATTACATCCTCATGGACCCAATGGAGAGAAAACGGCTCTTTATTGAGAGCATCCCCCGCTTGTTTCCTCAAAGAGTGATCCGGGCCCCTGTGCCCTGGCACAGTGTCTACAGGAGCGCCAAGAAGTGGAACGAGGAGCATCTGCACACGGTGAACCCCATGATGCTCAGGCTGAAAGAACTGTGGTTTGCAGA
Seq A exon
ATTCAGAGACCTCAGGTTTGTTCGAACAGCAGAAATACTAGCGGGAAAATTGCCTCTGCAGCCTCAGGAATTTTGGGATGTGATCCAGAAACACTGCCTGGAGGCACACCAGACTCTTCTCAACAA
Seq C2 exon
GTGGATCCCCACCTGCGCCCAGCTTTTTACCTCACGGAAGGAGCACTGGATTCATTTTGCTCCCAAGAGCAACTATGACTCAAGTCGAAACATTGAGGAATATTTTGCTTCTGTGGCATCATTCATGTCGCTGCAGCTTAGGGAGCTGGTCATTAAGTCACTTGAGGACCTCGTTTCCCTTTTCATGATACACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'14-18,'14-17,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGAGGAGCATCTGCACAC
R:
AGGGAAACGAGGTCCTCAAGT
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains