MmuEX6013629 @ mm9
Exon Skipping
Gene
ENSMUSG00000052273 | Dnahc3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:127221891-127226810:-
Coord C1 exon
chr7:127226615-127226810
Coord A exon
chr7:127222872-127222997
Coord C2 exon
chr7:127221891-127222086
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTCGATTCTGGCAGATT
3' ss Score
7.58
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
TTGACTACATCCTCATGGACCCAATGGAAAAGAAAAGGCTGTTCATCAAGAGCATCCCTCGATTGTTTCCTCACAGAGTGATCCGGGCCCCTGTGCCCTGGCACAACATCTACCAGAGTACCAAGAAGTGGAATGAGGAGCATTTGCACACAGTGAATCCCATGATGTACAAACTCAAAGAACTGTGGTTTGCAGA
Seq A exon
ATTTCAAAACCTCAGGTTTGTTCGAACAGCAGACTTACTGGCTGGAAAGTTGCCCTTGCTGCCTCACGAGTACAAGGAGGTGGTCCAGAAGCACTGCCGGGAGGCGCGTCATATTCTACTCACCAA
Seq C2 exon
ATGGATCCCCACCTGTGCCCAGCTTTTTGTGACCCAGAAGGAGCACTGGGTTCACTTCGCTCCCAAGAATGACTATGACTCCTCTCGGAACATTGAGGAATACTTCGCTTCTGTTGCTTCCTTCATGTCCCTACAGCTCCGAGATTTGGTCATTAAGTCCCTCAGGGACCTCGTTTCTTTCTTCATGATACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGCACAACATCTACCAG
R:
CTCGGAGCTGTAGGGACATGA
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: