GgaEX1020189 @ galGal3
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15751052-15754001:-
Coord C1 exon
chr14:15753806-15754001
Coord A exon
chr14:15752743-15752868
Coord C2 exon
chr14:15751052-15751247
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTTTGCTCTCCATAGGTA
3' ss Score
11.47
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
TTGATTACATCTTGATGGATCCAGCTGAGAGAGAGAGACTTCTGATTGGAAGTACCCCACGCCCTTTTCTCCTGAGAGTCATCCGGGCACCCGTCCCATGGCACAGCTCTTACAAAGAAGCAAAAAGCTGGAATGAAAGCAATCTGTTCATTGTCAATCCACTGATGCACACTTTACATCAGCTTTGGCTTTCTGA
Seq A exon
GTACAGTTGTCTGAGGTTTGTTCGCACTGAAGAGATCTGTGGTGGAGAACTGCCGCTGCCGCCTGCCGGCTTTGTGGACACGGTTCGCAGGCACTGTGTGGAAGCTCATGGTGTTCTCCTGAACAA
Seq C2 exon
GTGGATCCCAACTTGTGCATCCATTTTACGTGATGAGAAAAGGAAGTGGCTTCATTTTGCTCCTGGAAATGACTACGATTCACCCCAGCAAATTGAGAGTTACTTCAGCTCAGTGGCCACTCTCATGTCGTTACAGCTCCGTCAGGTGGTTGTTAGCTCCTTGGAGGACCTTCTTAGGTTTTTTATGATGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATTGGAAGTACCCCACGC
R:
TGCTGGGGTGAATCGTAGTCA
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]