MmuEX6013629 @ mm10
Exon Skipping
Gene
ENSMUSG00000052273 | Dnah3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:120078377-120083296:-
Coord C1 exon
chr7:120083101-120083296
Coord A exon
chr7:120079358-120079483
Coord C2 exon
chr7:120078377-120078572
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTCGATTCTGGCAGATT
3' ss Score
7.58
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
TTGACTACATCCTCATGGACCCAATGGAAAAGAAAAGGCTGTTCATCAAGAGCATCCCTCGATTGTTTCCTCACAGAGTGATCCGGGCCCCTGTGCCCTGGCACAACATCTACCAGAGTACCAAGAAGTGGAATGAGGAGCATTTGCACACAGTGAATCCCATGATGTACAAACTCAAAGAACTGTGGTTTGCAGA
Seq A exon
ATTTCAAAACCTCAGGTTTGTTCGAACAGCAGACTTACTGGCTGGAAAGTTGCCCTTGCTGCCTCACGAGTACAAGGAGGTGGTCCAGAAGCACTGCCGGGAGGCGCGTCATATTCTACTCACCAA
Seq C2 exon
ATGGATCCCCACCTGTGCCCAGCTTTTTGTGACCCAGAAGGAGCACTGGGTTCACTTCGCTCCCAAGAATGACTATGACTCCTCTCGGAACATTGAGGAATACTTCGCTTCTGTTGCTTCCTTCATGTCCCTACAGCTCCGAGATTTGGTCATTAAGTCCCTCAGGGACCTCGTTTCTTTCTTCATGATACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'9-12,'9-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGCACAACATCTACCAG
R:
CTCGGAGCTGTAGGGACATGA
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types