GgaEX1020189 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15033618-15036567:-
Coord C1 exon
chr14:15036372-15036567
Coord A exon
chr14:15035309-15035434
Coord C2 exon
chr14:15033618-15033813
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTTTGCTCTCCATAGGTA
3' ss Score
11.47
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
TTGATTACATCTTGATGGATCCAGCTGAGAGAGAGAGACTTCTGATTGGAAGTACCCCACGCCCTTTTCTCCTGAGAGTCATCCGGGCACCCGTCCCATGGCACAGCTCTTACAAAGAAGCAAAAAGCTGGAATGAAAGCAATCTGTTCATTGTCAATCCACTGATGCACACTTTACATCAGCTTTGGCTTTCTGA
Seq A exon
GTACAGTTGTCTGAGGTTTGTTCGCACTGAAGAGATCTGTGGTGGAGAACTGCCGCTGCCGCCTGCCGGCTTTGTGGACACGGTTCGCAGGCACTGTGTGGAAGCTCATGGTGTTCTCCTGAACAA
Seq C2 exon
GTGGATCCCAACTTGTGCATCCATTTTACGTGATGAGAAAAGGAAGTGGCTTCATTTTGCTCCTGGAAATGACTACGATTCACCCCAGCAAATTGAGAGTTACTTCAGCTCAGTGGCCACTCTCATGTCGTTACAGCTCCGTCAGGTGGTTGTTAGCTCCTTGGAGGACCTTCTTAGGTTTTTTATGATGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATTGGAAGTACCCCACGC
R:
TGCTGGGGTGAATCGTAGTCA
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]