BtaEX6109034 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19075474-19079133:-
Coord C1 exon
chr25:19079020-19079133
Coord A exon
chr25:19078082-19078258
Coord C2 exon
chr25:19075474-19075565
Length
177 bp
Sequences
Splice sites
3' ss Seq
ACCAGCCATTCTCACTCCAGGTA
3' ss Score
8.85
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TGTGTGGTCTTCAACTGCTCTGATGGTCTGGATTACAAAGCCATGGGGAAGTTCTTCAAAGGACTAGCCCAGGCTGGAGCATGGGCCTGCTTTGATGAGTTCAACAGGATTGAG
Seq A exon
GTAGAAGTACTGTCTGTGGTAGCTCAACAGATTCTCAGCATTCAACAAGCCATTATCCGGAAGCTAAAGACATTCATCTTTGAAGGCACCGAGCTCTCTCTAAACCCAACCTGTGCAGTCTTCATCACCATGAACCCTGGGTATGCTGGCAGGGCTGAGCTGCCAGATAATCTCAAG
Seq C2 exon
GCCTTGTTTCGGACAGTGGCCATGATGGTGCCAGATTATGCCCTCATTGGAGAAATCTCCCTCTACTCTATGGGATTTCTAGACTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(16.0=100)
A:
PF127742=AAA_6=FE(25.1=100)
C2:
PF127742=AAA_6=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGTCTTCAACTGCTCTG
R:
TCTGGAGTCTAGAAATCCCATAGAGT
Band lengths:
204-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]