MmuEX6013648 @ mm9
Exon Skipping
Gene
ENSMUSG00000052273 | Dnahc3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:127166409-127173596:-
Coord C1 exon
chr7:127173483-127173596
Coord A exon
chr7:127172408-127172584
Coord C2 exon
chr7:127166409-127166500
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCTGGGTATTCTCTGCACAGGTG
3' ss Score
7.27
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TGTGTGGTCTTCAATTGTTCTGACGGCTTGGATTACAAAGCCATGGGCAAGTTCTTCAAGGGGCTGGCTCAAGCTGGAGCATGGGCCTGTTTTGATGAATTCAACAGGATTGAG
Seq A exon
GTGGAAGTACTGTCAGTGGTAGCCCAACAGATTCTCAGCATCCAGCAAGCCATTATCAGGAAGCTGAAGAGGTTCATCTTTGAAGGCACTGAGCTCTCACTGAACCCAACCTGTGCTGTCTTCATCACCATGAATCCTGGGTATGCTGGCAGGGCTGAGCTGCCAGATAACCTCAAG
Seq C2 exon
GCCTTATTCCGAACAGTAGCCATGATGGTGCCAGATTATGCTCTTATTGGAGAAATCTCCCTCTATTCTATGGGATTTCTGGACTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(16.0=100)
A:
PF127742=AAA_6=FE(25.1=100)
C2:
PF127742=AAA_6=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGTCTTCAATTGTTCTGAC
R:
TGGAGTCCAGAAATCCCATAGA
Band lengths:
202-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: