HsaEX6042662 @ hg38
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:21039852-21049682:-
Coord C1 exon
chr16:21049569-21049682
Coord A exon
chr16:21042027-21042203
Coord C2 exon
chr16:21039852-21039943
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCCGGGCATTCTCACCCCAGGTA
3' ss Score
7.88
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TGTGTGGTCTTCAACTGCTCCGATGGTTTGGATTACAAAGCTATGGGGAAGTTCTTCAAGGGGCTGGCACAGGCTGGAGCATGGGCGTGCTTTGATGAGTTCAACAGGATCGAG
Seq A exon
GTAGAAGTGCTGTCTGTGGTCGCTCAGCAGATCCTCAGCATCCAACAAGCCATCATTCGGAAGCTAAAGACATTCATCTTTGAAGGGACTGAGCTCTCTCTGAACCCAACCTGCGCTGTGTTCATCACCATGAACCCCGGGTATGCTGGCAGGGCTGAACTGCCCGACAATCTCAAG
Seq C2 exon
GCCTTGTTCCGGACAGTGGCCATGATGGTCCCAGATTACGCCCTCATTGGAGAAATCTCCCTCTACTCCATGGGGTTTCTGGACTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'45-49,'45-48,49-49
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(16.0=100)
A:
PF127742=AAA_6=FE(25.1=100)
C2:
PF127742=AAA_6=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGTCTTCAACTGCTCC
R:
TGGAGTCCAGAAACCCCATGG
Band lengths:
202-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains