DreEX6096504 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39579418-39580177:+
Coord C1 exon
chr24:39579418-39579531
Coord A exon
chr24:39579660-39579836
Coord C2 exon
chr24:39580086-39580177
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTTGGTCGTTTTGTGCCAGGTG
3' ss Score
7.94
5' ss Seq
AAAGTAACC
5' ss Score
2.93
Exon sequences
Seq C1 exon
TGTGTGGTGTTCAACTGTTCTGATGGTCTGGACTACAAAGCGATGAGTAAATTCTTCAAAGGCCTGGCACAGTCTGGAGCGTGGGCATGTTTTGATGAGTTCAACCGGATAGAG
Seq A exon
GTGGAGGTGTTGTCTGTGGTCGCTCAGCAGATTTTGAGTATTCAGCAGGCTGTAATGCGAAACATGAAGACGTTTATGTTTGAGGGAACTGAGCTCTCCCTAAACCCAACATGCTGCGTGTTTATCACCATGAATCCAGGATACGCAGGCAGAGCAGAACTACCCGATAACCTCAAA
Seq C2 exon
GCTTTGTTCCGCACAGTTGCTATGATGGTTCCAGATTATGGGCTGATTGGAGAAATATCGCTTTATTCAATGGGATTCACAGCTTCCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(16.0=100)
A:
PF127742=AAA_6=FE(25.1=100)
C2:
PF127742=AAA_6=FE(13.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGTGTTCAACTGTTCTGA
R:
CGGGAAGCTGTGAATCCCATT
Band lengths:
203-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]