HsaEX6042662 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21051174-21061003:-
Coord C1 exon
chr16:21060890-21061003
Coord A exon
chr16:21053349-21053525
Coord C2 exon
chr16:21051174-21051265
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCCGGGCATTCTCACCCCAGGTA
3' ss Score
7.88
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TGTGTGGTCTTCAACTGCTCCGATGGTTTGGATTACAAAGCTATGGGGAAGTTCTTCAAGGGGCTGGCACAGGCTGGAGCATGGGCGTGCTTTGATGAGTTCAACAGGATCGAG
Seq A exon
GTAGAAGTGCTGTCTGTGGTCGCTCAGCAGATCCTCAGCATCCAACAAGCCATCATTCGGAAGCTAAAGACATTCATCTTTGAAGGGACTGAGCTCTCTCTGAACCCAACCTGCGCTGTGTTCATCACCATGAACCCCGGGTATGCTGGCAGGGCTGAACTGCCCGACAATCTCAAG
Seq C2 exon
GCCTTGTTCCGGACAGTGGCCATGATGGTCCCAGATTACGCCCTCATTGGAGAAATCTCCCTCTACTCCATGGGGTTTCTGGACTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'35-37,'35-36,36-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(16.0=100)
A:
PF127742=AAA_6=FE(25.1=100)
C2:
PF127742=AAA_6=FE(13.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGTCTTCAACTGCTCC
R:
TGGAGTCCAGAAACCCCATGG
Band lengths:
202-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)