GgaEX1020185 @ galGal3
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15728039-15731108:-
Coord C1 exon
chr14:15730995-15731108
Coord A exon
chr14:15728819-15728995
Coord C2 exon
chr14:15728039-15728130
Length
177 bp
Sequences
Splice sites
3' ss Seq
AATTCGCTCTGCCTTATTAGGTT
3' ss Score
7.29
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
TGTGTGGTCTTTAACTGCTCGGATGGTCTTGATTACAAGGCAATGGCCAAGTTCTTTAAAGGTCTGGCACAGTCTGGGGCATGGTCCTGCTTTGATGAATTCAATCGGATTGAG
Seq A exon
GTTGAAGTATTGTCTGTGGTCGCCCAACAAATACTTACCATACAGCAAGCTATTATCCGTAAAGTCAAAACGTTCATCTTTGAAGGCACTGAGATCTCTCTCAATCCCACCTGTGCTGTGTTCATCACAATGAATCCTGGCTATGCCGGCCGGGCTGAGCTGCCCGATAATCTGAAG
Seq C2 exon
GCATTGTTTCGAACAGTTGCCATGATGGTACCGGATTATTCTTTGATTGGAGAAATTTCACTTTATTCTATGGGATTTTTGGACTCTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-'37-36,'37-35,38-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(16.0=100)
A:
PF127742=AAA_6=FE(25.1=100)
C2:
PF127742=AAA_6=FE(13.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGTCTTTAACTGCTCGG
R:
CTTCGAGAGTCCAAAAATCCCA
Band lengths:
206-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]