BtaEX6109042 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:18994809-19051103:-
Coord C1 exon
chr25:19050998-19051103
Coord A exon
chr25:19047232-19047361
Coord C2 exon
chr25:18994809-18995054
Length
130 bp
Sequences
Splice sites
3' ss Seq
AATTTTACTTGTACTCTTAGGTC
3' ss Score
7.5
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGTGGAATGATCTACATGGAACCCCATCAGCTAGGCTGGAAGCCCCTGAAGGATTCCTACATGGATACCCTGCCTTCCAGTCTCACTGAGGAGCACAAGGAATTG
Seq A exon
GTCAATGACATGTTCATGTGGCTTGTCCAGCCCTGCCTTGAATTTACTCGCCTTCACTGTAAATTTGTGGTCCAAACATCTCCCATCCACCTTGCCTTCTCAATGATGAGACTGTACTCCTCTCTCCTTG
Seq C2 exon
ATGAAATCAGGGAAGTAGAAGAGGAGGAAAGTGAATTATTTGAAGGCCTGACAAGCCAACAGATCTTCCTCTGGCTACAAGGTCTGTTCCTTTTTGCCTTGGTGTGGACGGTGGCCGGCACCATCAACGCAGACAGCAGAAAGAAATTTGATCTGTTTTTCCGCAACCTGATCATGGGTATGGATAATAACAACCCAAGACCCAAAAGCGTCAAACTCACCAAAAACAACATCTTTCCAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'40-42,'40-41,41-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(0.7=2.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACCCTGCCTTCCAGTCT
R:
CGCTTTTGGGTCTTGGGTTGT
Band lengths:
253-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]