DreEX6096497 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39585591-39589699:+
Coord C1 exon
chr24:39585591-39585696
Coord A exon
chr24:39589259-39589388
Coord C2 exon
chr24:39589472-39589699
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCCTGTGTGTTTTGTCAAAGATT
3' ss Score
6.58
5' ss Seq
TGGGTATAT
5' ss Score
2.05
Exon sequences
Seq C1 exon
ATGCGGTATGATCTACATGGAGCCGCATCAGTTGGGCTGGACGCCTCTGAGAGACTCTTACATGAACACATTACCTGAGAGCCTGGCAGATGAACACAGAACACTG
Seq A exon
ATTGCTGATCTCTTCAACTGGCTGGTTCAACCTTGCTTGGACTTTATTTACCACGAGTGTGGATTCTTAGTTCAGACGTCACCCATTCACCTGGCTTACAGTCTGATGCGCCTGTATACCTGTCTGCTGG
Seq C2 exon
ATGAGATTTTTCAGGAAGGAGCAGAGTCGATGACCAGTCAGCAGATGACCCTGTGGCTTCAGTCCCTGTTTCTCTTCGCTGTGGTGTGGAGTTTGGGGGGAACCGTCAATGGCAACAGCAGGAATAAGTTTGACACCTTCTACCGAAACCTCCTCATGGGCACAATCACTGATCACCCGCGCCCTATGAGCGTGAAGCTCACCAAAAACAATGGGTTCCCTGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(0.7=2.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGCCTCTGAGAGACTCTT
R:
GGGTGATCAGTGATTGTGCCC
Band lengths:
246-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]