MmuEX6013656 @ mm10
Exon Skipping
Gene
ENSMUSG00000052273 | Dnah3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:119992860-120007939:-
Coord C1 exon
chr7:120007834-120007939
Coord A exon
chr7:120005648-120005777
Coord C2 exon
chr7:119992860-119993105
Length
130 bp
Sequences
Splice sites
3' ss Seq
ACAAAGCTTTCTCCTCTCAGGTT
3' ss Score
7.47
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTGTGGGATGATCTACATGGAGGCCCACCAGCTGGGCTGGAAGCCCTTGAAGGACTCATACATGGATACTTTGCCCCGCTGTCTCACTAAGGAGCACACAGAACTG
Seq A exon
GTTGAGGACATGTTCACGTGGCTTGTGCAGCCCTGTCTGGACTTTAGTCGGCTCCATTGCAAATTTGTGGTGCAAACATCTCCCATCCACCTTGCCTTCTCAATGATGCGGCTGTACTCCTCCCTGCTGG
Seq C2 exon
ATGAAATCCGGGACATCCAGGAGGAGGAAATGGAGATATATGAAGGTCTGTCAAGCCAGCAGATCTTCCTCTGGCTGCAAGGCCTGTTTCTTTTCTCCTTGGTGTGGACTTTGGCGGGTACCATCAATGCTGAGAGCAGAAAGAAATTTGATGTATTTTTCCGCAACCTGATCATGGGCATGGATGATCGTAACCCAAGGCCCAAGAGTGTGAAACTCACCAAAAACAACATCTTCCCAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'48-49,'48-48,49-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(0.7=2.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCCCTTGAAGGACTCA
R:
CCCATGATCAGGTTGCGGAAA
Band lengths:
247-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types