HsaEX0020188 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21030946-21036023:-
Coord C1 exon
chr16:21035918-21036023
Coord A exon
chr16:21033293-21033422
Coord C2 exon
chr16:21030946-21031191
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATGGAGGTTTCTACTCTCAGGTC
3' ss Score
4.82
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGTGGGATGATCTACATGGAGCCCCATCAACTAGGCTGGAAGCCCCTGAAGGATTCCTACATGGACACCCTGCCCTCCAGTCTCACCAAGGAGCACAAAGAATTG
Seq A exon
GTCAATGACATGTTCATGTGGCTTGTCCAGCCCTGCCTGGAATTTGGTCGCCTTCATTGTAAATTTGTTGTCCAGACATCTCCCATCCACCTTGCCTTCTCAATGATGAGACTGTACTCTTCTCTGCTTG
Seq C2 exon
ATGAAATCAGGGCAGTAGAAGAGGAGGAAATGGAATTAGGTGAAGGCCTGTCAAGTCAACAGATCTTTCTCTGGCTCCAAGGACTGTTTCTCTTTTCCTTGGTGTGGACCGTGGCTGGCACCATCAACGCAGACAGCAGAAAGAAATTTGATGTGTTTTTCCGCAACCTGATCATGGGCATGGATGATAACCACCCAAGGCCCAAAAGCGTCAAACTCACCAAAAACAACATCTTTCCAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(0.7=2.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGTCTCACCAAGGAGCA
R:
GTTTGACGCTTTTGGGCCTTG
Band lengths:
247-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)