GgaEX1020187 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15005235-15007723:-
Coord C1 exon
chr14:15007618-15007723
Coord A exon
chr14:15005946-15006075
Coord C2 exon
chr14:15005235-15005471
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCTTTTTCCTGGCAGGTC
3' ss Score
12.11
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGTGGTATGATCTATATGGACCCACAGCAGCTGGGTTGGAAGCCGCTGAAGGATTCCTACATGCATACACTGCCTCCAAACCTGCAGGATGAGCACCGGGAGCTG
Seq A exon
GTCAACAACCTGTTCATGTGGCTAGTTGAGCCCTGTTTAGATTTCATTCACCATCATTGCAAAGCCATTGTACAAACGTCCTCTATTCATCTGACTTATAGCTTGATGAAACTGTATACTTGTCTGCTTG
Seq C2 exon
ATGAAATAAAGCAACCTGAGGAAGAGGGGAAGGAAAGCATGTCGAGTCAGCAGATCGCCTTGTGGCTGCAGGGGCTCTTCCTTTTTGCTTTGGTTTGGACGATTGGTGGGACCATTGATGCAGACAGCAGAAAGAAGTTTGATTTGTTTTACCGTAACTTGTTAATGGGGACAGATGATGGAAACCAACGCCCTAAGAATGTGAAGATTACCAGAAACAACATCTTCCCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-'47-45,'47-43,48-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.106
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(0.7=2.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGCTGAAGGATTCCTACA
R:
GGGCGTTGGTTTCCATCATCT
Band lengths:
258-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]