BtaEX6109671 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007955 | SEZ6L2
Description
Bos taurus seizure related 6 homolog (mouse)-like 2 (SEZ6L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045927]
Coordinates
chr25:26631375-26634213:+
Coord C1 exon
chr25:26631375-26631538
Coord A exon
chr25:26633416-26633616
Coord C2 exon
chr25:26634075-26634213
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGTGACTGACTCCTCTCTAGCCT
3' ss Score
5.24
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GCTGATGGTACGCTCAGGGGGCAGTCCCCTCTCACCAGTGATCTATGACTCGGACATGGATGATGTCCCAGAGCGGGGTCTCATCAGTGATGCCCAGTCTCTCTATGTGGAGCTGCTTTCAGAGACACCTGCCAATCCCCTGCTGCTAAGCCTCCGATTTGAAG
Seq A exon
CCTTTGAGGAAGATCGCTGCTTTGCCCCCTTCCTGGCACATGGCAACGTCACCACCACGGACCCTGAGTACCGCCCAGGGGCACTGGCCACCTTCTCGTGCCTCCCAGGATATGCCCTGGAGCCCCCTGGTCCCCCCAATGTCATCGAATGTGTGGATCCTACAGAACCCCACTGGAATGACACGGAGCCAGCCTGCAAGG
Seq C2 exon
CCATGTGTGGAGGGGAGCTGTCAGAGCCAGCTGGTGTGGTCCTCTCTCCGGATTGGCCCCAGAGCTATAGCCCTGGCCAAGACTGTGTGTGGGGTCTGCATGTCCAGGAAGAAAAACGCATCTTGCTCCAAGTTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007955-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.265 C2=0.085
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(43.3=75.0)
A:
PF0008415=Sushi=WD(100=88.2)
C2:
PF0043115=CUB=PU(40.4=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGGTACGCTCAGGGGG
R:
TCTCAACTTGGAGCAAGATGC
Band lengths:
301-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]