MmuEX1023342 @ mm10
Exon Skipping
Gene
ENSMUSG00000030683 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:MGI Symbol;Acc:MGI:2385295]
Coordinates
chr7:126959791-126962491:+
Coord C1 exon
chr7:126959791-126959954
Coord A exon
chr7:126961737-126961937
Coord C2 exon
chr7:126962353-126962491
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGTGACAAACTCATTTCTAGCCT
3' ss Score
4.45
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCTGATGGTGCGCTCAGGGGGAAGCCCCCTGTCCCCTGTGATTTACGACTCTGACATGGATGATGTCCCTGAACGCGGTCTCATCAGTGATGCCCAGTCCCTCTACGTAGAACTGCTTTCAGAGACACCAGCCAACCCCCTGCTGCTCAGCCTCCGATTTGAAG
Seq A exon
CCTTTGAGGAGGACCGCTGCTTCCCCCCGTTCCTGGCTCACGGCAATGTGACCACTACAGATCCTGAGTTCCACCCAGGAGCACTGGCCACCTTCTCATGCCTCCCAGGATATGCTCTGGAGCCACCAGGACCCCCCAATGCTATCGAATGTGTGGATCCCACCGAACCCCACTGGAACGACACAGAGCCAGCCTGCAAGG
Seq C2 exon
CCATGTGTGGAGGAGAGCTGTCTGAGCCAGCTGGTGTGGTACTCTCTCCCGACTGGCCCCAGAGTTACAGCCCTGGCCAAGACTGCGTGTGGGGCCTGCACGTCCAGGAAGAGAAGCGCATCTTGCTCCAAGTTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030683-'10-20,'10-16,13-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.165 A=0.300 C2=0.106
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(43.3=75.0)
A:
PF0008415=Sushi=WD(100=88.2)
C2:
PF0043115=CUB=PU(40.4=93.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGGTGCGCTCAGG
R:
TTTCAACTTGGAGCAAGATGC
Band lengths:
302-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types