HsaEX0057559 @ hg19
Exon Skipping
Gene
ENSG00000174938 | SEZ6L2
Description
seizure related 6 homolog (mouse)-like 2 [Source:HGNC Symbol;Acc:30844]
Coordinates
chr16:29889608-29897070:-
Coord C1 exon
chr16:29896907-29897070
Coord A exon
chr16:29891185-29891385
Coord C2 exon
chr16:29889608-29889746
Length
201 bp
Sequences
Splice sites
3' ss Seq
TATGACTGACTCCTTCCCAGCCT
3' ss Score
4.14
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTGATGGTGCGCTCAGGGGGCAGCCCCCTATCCCCCGTGATCTATGATTCGGACATGGACGATGTCCCCGAGCGGGGTCTCATCAGTGACGCCCAGTCCCTCTACGTGGAGCTGCTGTCAGAGACACCTGCCAATCCCCTGCTGTTAAGCCTTCGATTTGAAG
Seq A exon
CCTTTGAGGAGGATCGCTGCTTCGCCCCCTTCCTGGCACATGGAAATGTCACTACCACGGACCCTGAGTATCGCCCAGGGGCACTGGCAACCTTCTCGTGCCTCCCAGGATATGCCCTGGAGCCCCCTGGGCCCCCCAATGCCATCGAATGTGTGGATCCCACAGAACCCCACTGGAACGACACAGAGCCGGCCTGCAAAG
Seq C2 exon
CCATGTGTGGAGGGGAGCTGTCGGAACCAGCTGGCGTGGTCCTCTCTCCCGACTGGCCCCAGAGCTATAGCCCGGGCCAAGACTGCGTGTGGGGCGTGCACGTCCAGGAAGAGAAGCGCATCTTGCTCCAAGTTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174938_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.143 A=0.294 C2=0.106
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(43.3=75.0)
A:
PF0008415=Sushi=WD(100=88.2)
C2:
PF0043115=CUB=PU(40.4=93.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGGTGCGCTCAGG
R:
TCTCAACTTGGAGCAAGATGC
Band lengths:
302-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)